Stroma Vascular Fraction- KEGG Annotation Clusters
 
Used notations:
 
  • "List Hits" - the number of genes annotated by the considered KEGG category or annotation cluster within the analyzed list of target genes
  • "List Total" - the number of genes within the analyzed list of target genes having at least one KEGG annotation
  • "Population Hits" - the number of genes, available on the entire microarray, annotated by the considered KEGG category or annotation cluster
  • "Population Total" - the number of genes available on the entire microarray and having at least one KEGG annotation
  • "P-value" - the significance p-value of the gene enrichment of the considered KEGG category or annotation cluster, calculated with a unilateral Fisher exact test
  • "FDR (q-value)" - the estimated value of the false discovery rate (FDR) by using the Benjamini & Hochberg (2001) method
 
 
Cluster 1 FDR (q-value) Terms List Hits List Total Population Hits Population Total P-value
2.20E-09 1 37 333 85 2093 5.49E-10
ID Term Rank List Hits List Total Population Hits Population Total P-values
3010 Ribosome 1 37 333 85 2093 5.49E-10
 
 
 
Cluster 2 FDR (q-value) Terms List Hits List Total Population Hits Population Total P-value
4.55E-05 2 25 333 69 2093 2.27E-05
ID Term Rank List Hits List Total Population Hits Population Total P-values
4610 Complement and coagulation cascades 2 24 333 68 2093 5.49E-05
4611 --- 3 14 333 33 2093 2.32E-04
 
 
 
Cluster 3 FDR (q-value) Terms List Hits List Total Population Hits Population Total P-value
3.58E-04 1 62 333 261 2093 2.68E-04
ID Term Rank List Hits List Total Population Hits Population Total P-values
4010 MAPK signaling pathway 4 62 333 261 2093 2.68E-04
 
 
 
Cluster 4 FDR (q-value) Terms List Hits List Total Population Hits Population Total P-value
3.69E-02 1 26 333 116 2093 3.69E-02
ID Term Rank List Hits List Total Population Hits Population Total P-values
760 Nicotinate and nicotinamide metabolism 5 26 333 116 2093 3.69E-02