SVF Genes - GO Cellular Component Annotation Clusters
 
Used notations:
 
  • "List Hits" - the number of genes annotated by the considered GO category or annotation cluster within the analyzed list of target genes
  • "List Total" - the number of genes within the analyzed list of target genes having at least one GO annotation (Cellular Component)
  • "Population Hits" - the number of genes, available on the entire microarray, annotated by the considered GO category or annotation cluster
  • "Population Total" - the number of genes available on the entire microarray and having at least one GO annotation (Cellular Component)
  • "P-value" - the significance p-value of the gene enrichment of the considered GO category or annotation cluster, calculated with a unilateral Fisher exact test
  • "FDR (q-value)" - the estimated value of the false discovery rate (FDR) by using the Benjamini & Hochberg (2001) method
 
 
FDR (q-value) Terms List Hits List Total Population Hits Population Total P-value
Cluster 1 2.91E-20 12 244 1500 715 7420 2.91E-20
ID Term Rank List Hits List Total Population Hits Population Total P-values
GO:0005578 extracellular matrix (sensu Metazoa) 2 48 1500 120 7420 4.47E-07
GO:0005764 lysosome 3 35 1500 81 7420 1.99E-06
GO:0005842 cytosolic large ribosomal subunit (sensu Eukaryota) 5 11 1500 17 7420 8.20E-05
GO:0005843 cytosolic small ribosomal subunit (sensu Eukaryota) 6 7 1500 8 7420 8.99E-05
GO:0005576 extracellular region 7 69 1500 226 7420 1.24E-04
GO:0008305 integrin complex 9 14 1500 28 7420 4.08E-04
GO:0005840 ribosome 10 34 1500 105 7420 2.14E-03
GO:0001527 microfibril 13 3 1500 3 7420 8.25E-03
GO:0030173 integral to Golgi membrane 15 12 1500 31 7420 1.37E-02
GO:0009897 external side of plasma membrane 18 4 1500 6 7420 1.76E-02
GO:0005945 6-phosphofructokinase complex 25 2 1500 2 7420 4.08E-02
GO:0005625 soluble fraction 26 39 1500 150 7420 4.96E-02
 
 
 
FDR (q-value) Terms List Hits List Total Population Hits Population Total P-value
Cluster 2 4.84E-13 5 305 1500 1063 7420 4.84E-13
ID Term Rank List Hits List Total Population Hits Population Total P-values
GO:0005615 extracellular space 1 81 1500 239 7420 3.50E-07
GO:0005886 plasma membrane 4 94 1500 317 7420 2.81E-05
GO:0005887 integral to plasma membrane 8 166 1500 639 7420 1.33E-04
GO:0042101 T cell receptor complex 12 5 1500 7 7420 4.89E-03
GO:0008290 F-actin capping protein complex 17 4 1500 6 7420 1.76E-02
 
 
 
FDR (q-value) Terms List Hits List Total Population Hits Population Total P-value
Cluster 3 1.11E-04 3 12 1500 20 7420 1.11E-04
ID Term Rank List Hits List Total Population Hits Population Total P-values
GO:0005885 Arp2/3 protein complex 16 4 1500 6 7420 1.76E-02
GO:0042612 MHC class I protein complex 20 6 1500 12 7420 2.03E-02
GO:0005602 complement component C1q complex 23 2 1500 2 7420 4.08E-02
 
 
 
FDR (q-value) Terms List Hits List Total Population Hits Population Total P-value
Cluster 4 2.43E-04 2 556 1500 2465 7420 2.43E-04
ID Term Rank List Hits List Total Population Hits Population Total P-values
GO:0016020 membrane 11 499 1500 2255 7420 3.84E-03
GO:0016021 integral to membrane 19 338 1500 1527 7420 2.03E-02
 
 
 
FDR (q-value) Terms List Hits List Total Population Hits Population Total P-value
Cluster 5 1.30E-03 2 6 1500 8 7420 1.30E-03
ID Term Rank List Hits List Total Population Hits Population Total P-values
GO:0016605 PML body 22 3 1500 4 7420 2.80E-02
GO:0005639 integral to nuclear inner membrane 21 3 1500 4 7420 2.80E-02
 
 
 
FDR (q-value) Terms List Hits List Total Population Hits Population Total P-value
Cluster 6 8.25E-03 1 3 1500 3 7420 8.25E-03
ID Term Rank List Hits List Total Population Hits Population Total P-values
GO:0001772

immunological synapse

 14 3 1500 3 7420 8.25E-03
 
 
 
FDR (q-value) Terms List Hits List Total Population Hits Population Total P-value
Cluster 7 4.08E-02 1 2 1500 2 7420 4.08E-02
ID Term Rank List Hits List Total Population Hits Population Total P-values
GO:0005791

rough endoplasmic reticulum

 24 2 1500 2 7420 4.08E-02