Genes DOWN - GO Biological Process Annotations

Used notations:

List Hits - the number of genes annotated by the considered GO Biological Process category or annotation cluster within the analyzed list of target genes

List Total - the number of genes within the analyzed list of target genes having at least one GO Biological Process annotation

Population Hits - the number of genes, available on the entire microarray, annotated by the considered GO Biological Process category or annotation cluster

Population Total - the number of genes available on the entire microarray and having at least one GO Biological Process annotation

P-value - the significance p-value of the gene enrichment of the considered GO Biological Process category or annotation cluster, calculated with a unilateral Fisher exact test

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Terms

Rank	ID	Term	List Hits	List Total	Population Hits	Population Total	P-value	Genes ID's	Genes Names
1	GO:0007165	signal transduction	138	1075	242	2249	1.47e-03	10293 10487 10527 10913 10982 1130 1136 1144 114814 1236 1241 1441 151 1524 158763 165829 1742 1809 185 1880 1901 1903 1908 1952 1969 2041 2065 2100 2132 2149 2150 219956 221393 22858 23092 23178 23179 2357 2533 2776 2785 2786 2794 2840 2859 2868 2870 2886 29 2912 29967 306 30818 3091 324 3357 3362 338442 3416 343406 3459 3588 3641 3667 3710 3822 3984 407 4306 4486 4680 4693 4739 4886 4920 4952 4982 4986 5145 51554 5272 5297 5328 54714 5480 552 5562 5599 5604 5662 5727 5732 57522 576 5770 5915 5995 5996 608 613 6198 6356 6364 6375 6416 6778 6789 7020 7088 7090 7130 7200 7356 7421 7422 7424 7474 79541 799 8174 8227 8302 834 85415 8737 8793 8809 8834 9052 9112 9289 931 9373 9462 9518 9542 9590 9982
2	GO:0007155	cell adhesion	62	1075	109	2249	3.23e-02	10020 1012 1015 1016 10205 10232 114781 117178 1302 1306 131566 1441 1490 1524 1901 2196 22795 255631 27283 2815 320 324 347902 3491 3685 3691 3694 3960 4099 43 4586 460 4608 4739 4974 51330 53616 53841 54413 54549 55576 5649 57526 5921 60437 6091 6347 6356 6376 6401 6402 64098 7057 7130 7399 81578 8174 88 9289 933 946 9638
3	GO:0006468	protein amino acid phosphorylation	60	1075	105	2249	3.12e-02	10221 10595 10783 120892 140609 150094 166614 1969 2041 2065 2263 22858 23178 23683 2533 26524 26750 2868 2870 2932 3984 4217 4486 4654 4920 5292 54899 5562 55681 5578 5579 5581 5584 5587 5588 5596 5599 5604 5610 57410 613 6198 6347 6356 6416 673 6732 6789 6850 7048 7443 7465 8737 9175 92 9252 9262 9263 94 9833
4	GO:0006955	immune response	57	1075	101	2249	4.69e-02	10346 1401 1440 151888 174 1880 2069 2152 23098 2495 2533 2669 285830 3140 3394 3426 3559 3569 3620 3630 3700 3976 4179 4783 4986 5005 5068 51297 51311 51554 5610 56477 5648 5996 608 6375 6376 671 6890 6932 6938 7126 715 722 729 731 732 7850 8174 868 8809 926 931 933 940 941 974
5	GO:0007275	development	56	1075	93	2249	9.53e-03	10408 10425 1044 117154 1440 161742 1952 1969 200734 2020 22858 2299 23181 27123 27130 3198 3205 3209 3213 3549 3641 3670 3691 3694 3720 3976 4084 4486 4605 4778 4803 4920 5047 5068 5080 5292 5469 56001 5618 5649 57125 608 6495 6615 6706 6938 7023 7057 7066 7088 7356 7625 7737 7855 81848 8804
6	GO:0007186	G-protein coupled receptor protein signaling pathway	49	1075	80	2249	9.6e-03	11249 114814 1236 1241 151 1524 165829 185 1880 1901 1903 1910 1952 2149 2150 219956 221393 22986 2357 23683 2776 2785 2840 2859 2912 2919 2921 3357 338442 343406 4886 4986 5028 51554 5294 552 5732 576 5995 6866 7052 7855 79541 799 8851 9052 9289 9427 9590
7	GO:0006915	apoptosis	45	1075	73	2249	1.10e-02	10595 10783 10912 10913 1434 1676 2149 22822 22868 2309 23213 23411 26586 27443 30818 332 3552 3559 3569 4217 4616 4792 4982 51330 54205 55288 5610 5921 6461 64651 6789 7042 7128 7161 83593 8565 8737 8793 8851 8870 9140 9262 9263 9423 9577
8	GO:0006357	regulation of transcription from RNA polymerase II promoter	37	1075	61	2249	2.81e-02	10001 10155 10847 148979 1997 22938 2309 2353 253461 29915 30818 3394 3607 3726 4331 4618 4654 4778 5469 57496 6648 6665 6689 6775 6778 687 6924 6932 6938 6944 7004 7020 7023 8061 8204 8804 9969
9	GO:0007166	cell surface receptor linked signal transduction	37	1075	60	2249	2.01e-02	11093 1440 1890 2069 23529 23765 2669 2892 3554 3559 3569 3630 3685 3691 3694 3820 3976 3977 4070 4739 51107 5329 5578 5618 5970 6376 6781 6789 6850 7855 867 868 8851 940 9510 974 978
10	GO:0030154	cell differentiation	36	1075	59	2249	2.68e-02	10397 10675 10912 10913 1306 1890 1948 2069 22854 23411 312 3589 4616 4618 4654 4656 5080 51330 5469 54904 55502 57135 5743 57496 5921 6091 6461 6698 6699 6706 6732 7042 7053 7422 7424 860
11	GO:0007264	small GTPase mediated signal transduction	35	1075	59	2249	4.8e-02	120892 127829 148252 22821 22931 23179 23365 23560 255426 26269 2669 29 375 377 3845 390 3984 4168 51128 55288 5662 57679 5867 5881 5921 613 64283 64284 7410 7879 8412 9265 9367 9462 998
12	GO:0016337	cell-cell adhesion	27	1075	42	2249	2.23e-02	1012 1015 1016 10205 1366 1952 2196 22918 3383 3385 347902 460 5068 5314 53841 57526 58494 60437 6091 6376 6850 7087 8851 9069 9073 933 9856
13	GO:0043066	negative regulation of apoptosis	25	1075	33	2249	9.37e-04	10892 23529 332 3552 4353 4605 5055 5272 5292 5562 5618 5921 597 5970 6347 673 7128 7178 7422 8793 8870 9021 940 9542 9577
14	GO:0006935	chemotaxis	21	1075	26	2249	5.52e-04	10563 1236 146225 1524 1890 2357 2919 2921 3491 3552 51554 5328 5329 5604 56477 6091 6347 6356 6364 6375 8061
15	GO:0009653	morphogenesis	17	1075	25	2249	3.29e-02	10205 1903 1908 1948 2149 2719 3491 3886 4320 4653 6299 64976 7042 7053 7054 7474 8870
16	GO:0000165	MAPKKK cascade	16	1075	21	2249	7.57e-03	10912 11221 161742 1844 1950 200734 2357 4217 4616 5518 5562 5599 6416 7164 7857 9175
17	GO:0007596	blood coagulation	16	1075	24	2249	4.85e-02	11093 2149 2150 2152 2677 2776 2815 3588 3589 5028 5054 5328 5329 5359 7056 7057
18	GO:0008284	positive regulation of cell proliferation	16	1075	24	2249	4.85e-02	1440 1903 1950 2069 3569 3589 3976 4486 4839 5967 7042 7048 7422 7424 8061 940
19	GO:0016064	immunoglobulin mediated immune response	16	1075	24	2249	4.85e-02	1236 3426 3820 4179 51311 5648 608 6364 6375 715 722 729 731 732 8302 933
20	GO:0050896	response to stimulus	16	1075	21	2249	7.57e-03	10594 1409 219956 343406 368 4070 4693 5145 54714 5995 6337 6339 7399 7840 79541 8989
21	GO:0016055	Wnt receptor signaling pathway	12	1075	17	2249	4.93e-02	23291 27123 27130 2932 324 5518 59343 6932 7088 7090 7474 7855
22	GO:0009968	negative regulation of signal transduction	10	1075	13	2249	3.23e-02	27123 5518 5996 5997 6001 6004 7088 7128 8601 9021
23	GO:0006807	nitrogen compound metabolism	6	1075	7	2249	4.9e-02	1373 383 5009 55350 7464 8875
24	GO:0007204	elevation of cytosolic calcium ion concentration	6	1075	7	2249	4.9e-02	10563 1236 185 1903 2150 552
25	GO:0007259	JAK-STAT cascade	6	1075	6	2249	1.18e-02	2149 23529 5618 6347 6775 9021
26	GO:0009063	amino acid catabolism	6	1075	7	2249	4.9e-02	131669 3620 5053 5860 594 92675
27	GO:0009072	aromatic amino acid family metabolism	6	1075	6	2249	1.18e-02	3620 5053 5860 7054 7299 7306
28	GO:0000041	transition metal ion transport	5	1075	5	2249	2.48e-02	2495 29986 51312 540 7018
29	GO:0006308	DNA catabolism	5	1075	5	2249	2.48e-02	1676 27443 3669 54205 7164
30	GO:0006875	metal ion homeostasis	5	1075	5	2249	2.48e-02	2495 4306 4502 4504 7018

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This file was produced on Fri Jan 5 12:58:15 2007 with FunCluster 1.03 using GO and KEGG annotations updated on 2006 Nov 03.